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LOC578974 ankyrin repeat domain-containing protein 50-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 578974, updated on 14-Dec-2023

Summary

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Gene symbol
LOC578974
Gene description
ankyrin repeat domain-containing protein 50-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC578974 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145606.1 (7791341..7797406, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577824.1 (268067..308530)

NW_022145606.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105436948 Neighboring gene ankyrin repeat domain-containing protein 50-like Neighboring gene uncharacterized LOC100890776 Neighboring gene transcriptional activator protein Pur-beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 50-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145606.1 Reference Spur_5.0 Primary Assembly

    Range
    7791341..7797406 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030993623.1 → XP_030849483.1  ankyrin repeat domain-containing protein 50-like

    UniProtKB/TrEMBL
    A0A7M7PC39
    Conserved Domains (3) summary
    PHA03095
    Location:321 → 593
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:378 → 409
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:22 → 114
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials