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LOC578892 F-actin-uncapping protein LRRC16A [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 578892, updated on 14-Dec-2023

Summary

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Gene symbol
LOC578892
Gene description
F-actin-uncapping protein LRRC16A
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
Also known as
lrrc16a
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Genomic context

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See LOC578892 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145614.1 (31673380..31764312)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577394.1 (492303..505294)

NW_022145614.1Genomic Context describing neighboring genes Neighboring gene monocarboxylate transporter 12-like Neighboring gene uncharacterized LOC755513 Neighboring gene AKT interacting protein Neighboring gene chromosome 8 open reading frame 82

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-actin-uncapping protein LRRC16A
Names
leucine rich repeat containing 16A
leucine-rich repeat-containing protein 16A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145614.1 Reference Spur_5.0 Primary Assembly

    Range
    31673380..31764312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030975465.1 → XP_030831325.1  F-actin-uncapping protein LRRC16A

    UniProtKB/TrEMBL
    A0A7M7N4Z1
    Conserved Domains (5) summary
    PHA03307
    Location:1400 → 1742
    PHA03307; transcriptional regulator ICP4; Provisional
    sd00033
    Location:482 → 509
    LRR_RI; leucine-rich repeat [structural motif]
    pfam16000
    Location:836 → 1219
    CARMIL_C; CARMIL C-terminus
    pfam17888
    Location:28 → 122
    Carm_PH; Carmil pleckstrin homology domain
    cl39015
    Location:497 → 683
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
Heading Accession and Version

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