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LOC577935 receptor-type tyrosine-protein phosphatase epsilon [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 577935, updated on 14-Dec-2023

Summary

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Gene symbol
LOC577935
Gene description
receptor-type tyrosine-protein phosphatase epsilon
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC577935 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145609.1 (35995062..36017276, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577182.1 (664588..680176, complement)

NW_022145609.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase MIB2-like Neighboring gene beta-1,3-glucan-binding protein Neighboring gene uncharacterized LOC115928704 Neighboring gene solute carrier family 23 member 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145609.1 Reference Spur_5.0 Primary Assembly

    Range
    35995062..36017276 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030996856.1 → XP_030852716.1  receptor-type tyrosine-protein phosphatase epsilon

    UniProtKB/TrEMBL
    A0A7M7PK90
    Conserved Domains (2) summary
    smart00194
    Location:518 → 769
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00063
    Location:167 → 260
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
Heading Accession and Version

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