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LOC577858 uncharacterized LOC577858 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 577858, updated on 14-Dec-2023

Summary

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Gene symbol
LOC577858
Gene description
uncharacterized LOC577858
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC577858 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145614.1 (15297977..15306797, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577522.1 (156749..162392, complement)

NW_022145614.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase omega-1 Neighboring gene partitioning defective 6 homolog beta Neighboring gene NADH:ubiquinone oxidoreductase core subunit V2 Neighboring gene kelch-like protein 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC577858

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145614.1 Reference Spur_5.0 Primary Assembly

    Range
    15297977..15306797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030975382.1 → XP_030831242.1  uncharacterized protein LOC577858

    UniProtKB/TrEMBL
    A0A7M7N5E9
    Conserved Domains (3) summary
    sd00045
    Location:141 → 168
    ANK; ANK repeat [structural motif]
    cd17063
    Location:13 → 88
    Ubl_ANKRD60; ubiquitin-like (Ubl) domain found in ankyrin repeat domain-containing protein 60 (ANKRD60) and similar proteins
    pfam12796
    Location:142 → 219
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_030975380.1 → XP_030831240.1  uncharacterized protein LOC577858

    UniProtKB/TrEMBL
    A0A7M7N5E9
    Conserved Domains (3) summary
    sd00045
    Location:141 → 168
    ANK; ANK repeat [structural motif]
    cd17063
    Location:13 → 88
    Ubl_ANKRD60; ubiquitin-like (Ubl) domain found in ankyrin repeat domain-containing protein 60 (ANKRD60) and similar proteins
    pfam12796
    Location:142 → 219
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_030975379.1 → XP_030831239.1  uncharacterized protein LOC577858

    UniProtKB/TrEMBL
    A0A7M7N5E9
    Conserved Domains (3) summary
    sd00045
    Location:141 → 168
    ANK; ANK repeat [structural motif]
    cd17063
    Location:13 → 88
    Ubl_ANKRD60; ubiquitin-like (Ubl) domain found in ankyrin repeat domain-containing protein 60 (ANKRD60) and similar proteins
    pfam12796
    Location:142 → 219
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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