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    LOC577523 uncharacterized oxidoreductase YjmC [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 577523, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC577523
    Gene description
    uncharacterized oxidoreductase YjmC
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC577523 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145603.1 (23995849..24017159, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577635.1 (367109..386755, complement)

    NW_022145603.1Genomic Context describing neighboring genes Neighboring gene four-jointed box protein 1 Neighboring gene uncharacterized LOC756364 Neighboring gene DENN domain-containing protein 2A Neighboring gene lipase maturation factor 2 Neighboring gene uncharacterized LOC115925517

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC577523
    Names
    malate dehydrogenase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145603.1 Reference Spur_5.0 Primary Assembly

      Range
      23995849..24017159 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030989533.1 → XP_030845393.1  uncharacterized protein LOC577523 isoform X1

      UniProtKB/TrEMBL
      A0A7M7P3B2
      Conserved Domains (1) summary
      pfam02615
      Location:41 → 372
      Ldh_2; Malate/L-lactate dehydrogenase

    2. XM_030989534.1 → XP_030845394.1  uncharacterized protein LOC577523 isoform X2

      UniProtKB/TrEMBL
      A0A7M7T0S7
      Conserved Domains (1) summary
      pfam02615
      Location:33 → 364
      Ldh_2; Malate/L-lactate dehydrogenase

    3. XM_030989535.1 → XP_030845395.1  uncharacterized protein LOC577523 isoform X3

      UniProtKB/TrEMBL
      A0A7M7P4P1
      Conserved Domains (1) summary
      pfam02615
      Location:1 → 243
      Ldh_2; Malate/L-lactate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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