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LOC576310 uncharacterized LOC576310 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 576310, updated on 14-Dec-2023

Summary

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Gene symbol
LOC576310
Gene description
uncharacterized LOC576310
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC576310 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145594.1 (32919999..32944973, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577767.1 (242489..275561)

NW_022145594.1Genomic Context describing neighboring genes Neighboring gene ryncolin-1-like Neighboring gene ficolin-2-like Neighboring gene uncharacterized LOC762799 Neighboring gene uncharacterized LOC105436714

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC576310

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145594.1 Reference Spur_5.0 Primary Assembly

    Range
    32919999..32944973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030978703.1 → XP_030834563.1  uncharacterized protein LOC576310

    UniProtKB/TrEMBL
    A0A7M7SVN3
    Conserved Domains (5) summary
    sd00006
    Location:1654 → 1682
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1780 → 1855
    TPR_12; Tetratricopeptide repeat
    pfam13271
    Location:930 → 1015
    DUF4062; Domain of unknown function (DUF4062)
    cl19819
    Location:1466 → 1626
    DUF499; Protein of unknown function (DUF499)
    cl38985
    Location:1185 → 1347
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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Research Materials