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    si:dkey-175d9.2 si:dkey-175d9.2 [ Danio rerio (zebrafish) ]

    Gene ID: 559062, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:dkey-175d9.2provided by ZNC
    Official Full Name
    si:dkey-175d9.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131119-97
    See related
    Ensembl:ENSDARG00000093476 AllianceGenome:ZFIN:ZDB-GENE-131119-97
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable GTP binding activity. Orthologous to human GIMAP8 (GTPase, IMAP family member 8). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See si:dkey-175d9.2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (4236935..4253264, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (4327896..4345680, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene interferon-induced very large GTPase 1 Neighboring gene uncharacterized LOC110439325 Neighboring gene si:dkey-73p2.1 Neighboring gene si:ch211-131e11.19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants. White RJ, et al. Elife, 2022 Feb 17. PMID 35175196, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:dkey-175d9.2
    Names
    reticulocyte-binding protein 2 homolog a-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      4236935..4253264 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_682369.10 → XP_687461.6  uncharacterized protein si:dkey-175d9.2

      See identical proteins and their annotated locations for XP_687461.6

      UniProtKB/TrEMBL
      A0A8N7T6S9, X1WE97
      Related
      ENSDARP00000128548.1, ENSDART00000155807.2
      Conserved Domains (2) summary
      cd01852
      Location:263 → 462
      AIG1; AvrRpt2-Induced Gene 1 (AIG1)
      cl21455
      Location:56 → 231
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein Strain
    Heading Accession and Version

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