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    LOC373365 integrin beta L subunit [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 373365, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC373365
    Gene description
    integrin beta L subunit
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC373365 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145610.1 (5935383..5968635)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577291.1 (228600..261478)

    NW_022145610.1Genomic Context describing neighboring genes Neighboring gene protein FAM166B-like Neighboring gene uncharacterized LOC105439659 Neighboring gene sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) Neighboring gene sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The betaL integrin subunit is necessary for gastrulation in sea urchin embryos. Marsden M, et al. Dev Biol, 1998 Nov 1. PMID 9806779
    2. Cloning and characterization of novel beta integrin subunits from a sea urchin. Marsden M, et al. Dev Biol, 1997 Jan 15. PMID 9013933
    3. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion mediated by integrin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of integrin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    integrin beta L subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214566.2 → NP_999731.2  integrin beta L subunit precursor

      Status: VALIDATED

      Source sequence(s)
      AAGJ05065713, AAGJ05065716
      UniProtKB/TrEMBL
      A0A7M6UT54

    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145610.1 Reference Spur_5.0 Primary Assembly

      Range
      5935383..5968635
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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