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    LOC115919132 sodium- and chloride-dependent GABA transporter ine-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 115919132, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC115919132
    Gene description
    sodium- and chloride-dependent GABA transporter ine-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC115919132 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145571.1 (325977..370474, complement)

    NW_022145571.1Genomic Context describing neighboring genes Neighboring gene protein HGH1 homolog Neighboring gene uncharacterized LOC115918268 Neighboring gene spindle and kinetochore-associated protein 2 Neighboring gene proline-rich protein 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022145571 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium- and chloride-dependent GABA transporter ine-like
    Names
    sodium-dependent alanine transporter 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145571.1 Reference Spur_5.0 Primary Assembly

      Range
      325977..370474 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030971996.1 → XP_030827856.1  sodium- and chloride-dependent GABA transporter ine-like isoform X2

      UniProtKB/TrEMBL
      A0A7M7MX51

    2. XM_030971991.1 → XP_030827851.1  sodium- and chloride-dependent GABA transporter ine-like isoform X1

      UniProtKB/TrEMBL
      A0A7M7MZ39
      Conserved Domains (1) summary
      cl00456
      Location:56 → 590
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. XM_030972005.1 → XP_030827865.1  sodium- and chloride-dependent GABA transporter ine-like isoform X3

      UniProtKB/TrEMBL
      A0A7M7MWX2
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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