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    LOC115919011 target of EGR1 protein 1-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 115919011, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC115919011
    Gene description
    target of EGR1 protein 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC115919011 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145609.1 (8880335..8885176, complement)

    NW_022145609.1Genomic Context describing neighboring genes Neighboring gene transcription factor BTF3 homolog 4-like Neighboring gene histone-binding protein N1/N2-like Neighboring gene adenine DNA glycosylase Neighboring gene jasmonoyl--L-amino acid synthetase GH3.5-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022145609 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Cajal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    target of EGR1 protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145609.1 Reference Spur_5.0 Primary Assembly

      Range
      8880335..8885176 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030996917.1 → XP_030852777.1  target of EGR1 protein 1-like

      UniProtKB/TrEMBL
      A0A7M7T495
      Conserved Domains (2) summary
      PHA03419
      Location:377 → 436
      PHA03419; E4 protein; Provisional
      pfam04857
      Location:10 → 248
      CAF1; CAF1 family ribonuclease
    Nucleotide Protein
    Heading Accession and Version

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