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    LOC115918707 regulating synaptic membrane exocytosis protein 2-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 115918707, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC115918707
    Gene description
    regulating synaptic membrane exocytosis protein 2-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC115918707 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145545.1 (558058..617014)

    NW_022145545.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC583882 Neighboring gene acidic repeat-containing protein-like Neighboring gene uncharacterized LOC115918701 Neighboring gene hyalin Neighboring gene uncharacterized LOC105438608 Neighboring gene kelch-like protein 17 Neighboring gene U11/U12 small nuclear ribonucleoprotein 25 kDa protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022145545 Unplaced Scaffold Reference Spur_5.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane transporter binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion-regulated exocytosis of neurotransmitter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of synaptic plasticity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoskeleton of presynaptic active zone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in presynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulating synaptic membrane exocytosis protein 2-like
    Names
    regulating synaptic membrane exocytosis protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145545.1 Reference Spur_5.0 Primary Assembly

      Range
      558058..617014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030987616.1 → XP_030843476.1  regulating synaptic membrane exocytosis protein 2-like isoform X3

      UniProtKB/TrEMBL
      A0A7M7NYL0
      Conserved Domains (3) summary
      cd04028
      Location:1615 → 1761
      C2B_RIM1alpha; C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins
      cd00992
      Location:619 → 698
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cl14603
      Location:783 → 904
      C2; C2 domain

    2. XM_030987619.1 → XP_030843479.1  regulating synaptic membrane exocytosis protein 2-like isoform X4

      UniProtKB/TrEMBL
      A0A7M7NYY1
      Conserved Domains (3) summary
      cd04028
      Location:1595 → 1741
      C2B_RIM1alpha; C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins
      cd00992
      Location:599 → 678
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cl14603
      Location:763 → 884
      C2; C2 domain

    3. XM_030987606.1 → XP_030843466.1  regulating synaptic membrane exocytosis protein 2-like isoform X1

      UniProtKB/TrEMBL
      A0A7M7NY53
      Conserved Domains (3) summary
      cd04028
      Location:1658 → 1804
      C2B_RIM1alpha; C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins
      cd00992
      Location:666 → 745
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cl14603
      Location:826 → 947
      C2; C2 domain

    4. XM_030987612.1 → XP_030843472.1  regulating synaptic membrane exocytosis protein 2-like isoform X2

      UniProtKB/TrEMBL
      A0A7M7SZT8
      Conserved Domains (3) summary
      cd04028
      Location:1642 → 1788
      C2B_RIM1alpha; C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins
      cd00992
      Location:646 → 725
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cl14603
      Location:810 → 931
      C2; C2 domain
    Nucleotide Protein
    Heading Accession and Version

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