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    LOC107998466 probable sodium/potassium/calcium exchanger CG1090 [ Apis cerana (Asiatic honeybee) ]

    Gene ID: 107998466, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC107998466
    Gene description
    probable sodium/potassium/calcium exchanger CG1090
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apis cerana
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See LOC107998466 in Genome Data Viewer
    Location:
    chromosome: LG7
    Exon count:
    9
    Annotation release Status Assembly LG Location
    RS_2023_12 current AcerK_1.0 (GCF_029169275.1) LG7 NC_083858.1 (3473199..3480132, complement)
    101 previous assembly ACSNU-2.0 (GCF_001442555.1) Unplaced Scaffold NW_016019242.1 (1036728..1050627, complement)

    Linkage Group LG7 - NC_083858.1Genomic Context describing neighboring genes Neighboring gene nuclear envelope integral membrane protein Neighboring gene tincar Neighboring gene uncharacterized LOC133666499 Neighboring gene Tetratricopeptide repeat domain 1 Neighboring gene tachykinins

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium, potassium:sodium antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable sodium/potassium/calcium exchanger CG1090
    Names
    Sodium/potassium/calcium exchanger 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_029169275.1-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AcerK_1.0 Primary Assembly

    Genomic

    1. NC_083858.1 Reference AcerK_1.0 Primary Assembly

      Range
      3473199..3480132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017057764.3 → XP_016913253.1  probable sodium/potassium/calcium exchanger CG1090

      UniProtKB/TrEMBL
      A0A2A3EIY0, V9IA28
    Nucleotide Protein
    Heading Accession and Version

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