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    LOC105372670 uncharacterized LOC105372670 [ Homo sapiens (human) ]

    Gene ID: 105372670, updated on 27-Aug-2024

    Summary

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    Gene symbol
    LOC105372670
    Gene description
    uncharacterized LOC105372670
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105372670 in Genome Data Viewer
    Location:
    20q13.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (53397668..53401319, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (55171419..55173476, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904932 Neighboring gene teashirt zinc finger homeobox 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:51664301-51665500 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:51681690-51682889 Neighboring gene NANOG hESC enhancer GRCh37_chr20:51683526-51684027 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:51705255-51705481 Neighboring gene RN7SK pseudogene 184 Neighboring gene MPRA-validated peak4263 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13046 Neighboring gene Sharpr-MPRA regulatory region 1604 Neighboring gene Sharpr-MPRA regulatory region 9561 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:51898656-51899211 Neighboring gene NANOG hESC enhancer GRCh37_chr20:51899474-51900080 Neighboring gene Sharpr-MPRA regulatory region 12391 Neighboring gene Sharpr-MPRA regulatory region 11508 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13047 Neighboring gene TSHZ2 antisense RNA 1 Neighboring gene peptidylprolyl isomerase A pseudogene 10 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:52077141-52077719 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:52077720-52078297 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:52089451-52090068

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      53397668..53401319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007067659.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      55171419..55173476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007089773.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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