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    LOC101886267 claudin-20 [ Danio rerio (zebrafish) ]

    Gene ID: 101886267, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC101886267
    Gene description
    claudin-20
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cldn20
    Orthologs
    all
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    Genomic context

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    See LOC101886267 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (49235359..49236893)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (49152020..49154152)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene HCLS1 binding protein 3 Neighboring gene TIAM Rac1 associated GEF 2a Neighboring gene transcription factor B1, mitochondrial Neighboring gene zgc:113176 Neighboring gene origin recognition complex, subunit 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    claudin-20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      49235359..49236893
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005169881.5 → XP_005169938.1  claudin-20

      UniProtKB/TrEMBL
      A0A8M9PF12
      Conserved Domains (1) summary
      cl21598
      Location:4 → 181
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
    Nucleotide Protein
    Heading Accession and Version

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