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LOC100893877 slit homolog 1 protein [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 100893877, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100893877
Gene description
slit homolog 1 protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC100893877 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145613.1 (11923468..11939482)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003580541.1 (35329..41735)

NW_022145613.1Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor-binding protein complex acid labile subunit Neighboring gene chondroadherin-like Neighboring gene STT3 oligosaccharyltransferase complex catalytic subunit A Neighboring gene solute carrier family 12 member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
slit homolog 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145613.1 Reference Spur_5.0 Primary Assembly

    Range
    11923468..11939482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003728207.3 → XP_003728255.2  slit homolog 1 protein

    UniProtKB/TrEMBL
    A0A7M7GGV7
    Conserved Domains (6) summary
    smart00082
    Location:869 → 915
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:571 → 805
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:572 → 595
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:764 → 823
    LRR_8; Leucine rich repeat
    pfam14580
    Location:791 → 872
    LRR_9; Leucine-rich repeat
    NF033189
    Location:76 → 369
    internalin_A; class 1 internalin InlA
Nucleotide Protein
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