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    LOC100888038 transcription initiation factor IIA subunit 1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 100888038, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100888038
    Gene description
    transcription initiation factor IIA subunit 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145537.1 (315120..335269)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578719.1 (71614..75983)

    NW_022145537.1Genomic Context describing neighboring genes Neighboring gene stonin-2-like Neighboring gene flocculation protein FLO11 Neighboring gene thyrotropin receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIIA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor IIA subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145537.1 Reference Spur_5.0 Primary Assembly

      Range
      315120..335269
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030983847.1 → XP_030839707.1  transcription initiation factor IIA subunit 1 isoform X2

      UniProtKB/TrEMBL
      A0A7M7NPB5
      Conserved Domains (1) summary
      pfam03153
      Location:11 → 329
      TFIIA; Transcription factor IIA, alpha/beta subunit

    2. XM_030983841.1 → XP_030839701.1  transcription initiation factor IIA subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A7M7SY14
      Conserved Domains (1) summary
      pfam03153
      Location:20 → 338
      TFIIA; Transcription factor IIA, alpha/beta subunit
    Nucleotide Protein
    Heading Accession and Version

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