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shaker potassium voltage-gated channel protein Shaker [ Bombus terrestris (buff-tailed bumblebee) ]

Gene ID: 100648438, updated on 15-May-2024

Summary

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Gene symbol
shaker
Gene description
potassium voltage-gated channel protein Shaker
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus terrestris
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Bombus
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Genomic context

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See shaker in Genome Data Viewer
Location:
chromosome: 7
Exon count:
28
Annotation release Status Assembly Chr Location
103 current iyBomTerr1.2 (GCF_910591885.1) 7 NC_063275.1 (1670759..1868879, complement)
102 previous assembly Bter_1.0 (GCF_000214255.1) Linkage Group LG B07 NC_015768.1 (514042..654008, complement)

Chromosome 7 - NC_063275.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125385404 Neighboring gene ras-related protein Rab-8A Neighboring gene uncharacterized LOC100647501 Neighboring gene uncharacterized LOC105665864 Neighboring gene uncharacterized LOC125385411 Neighboring gene uncharacterized LOC125385410 Neighboring gene uncharacterized LOC105665863 Neighboring gene uncharacterized LOC125385412 Neighboring gene small ribonucleoprotein particle U1 subunit 70K Neighboring gene uncharacterized LOC110119421

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables delayed rectifier potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated potassium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium voltage-gated channel protein Shaker

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus terrestris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iyBomTerr1.2

Genomic

  1. NC_063275.1 Reference iyBomTerr1.2

    Range
    1670759..1868879 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048407307.1 → XP_048263264.1  potassium voltage-gated channel protein Shaker isoform X3

    UniProtKB/TrEMBL
    A0A9C6SMD3

  2. XM_048407305.1 → XP_048263262.1  potassium voltage-gated channel protein Shaker isoform X3

    UniProtKB/TrEMBL
    A0A9C6SMD3

  3. XM_048407306.1 → XP_048263263.1  potassium voltage-gated channel protein Shaker isoform X3

    UniProtKB/TrEMBL
    A0A9C6SMD3

  4. XM_048407302.1 → XP_048263259.1  potassium voltage-gated channel protein Shaker isoform X3

    UniProtKB/TrEMBL
    A0A9C6SMD3

  5. XM_048407311.1 → XP_048263268.1  potassium voltage-gated channel protein Shaker isoform X5

    UniProtKB/TrEMBL
    A0A9C6W4H1

  6. XM_048407303.1 → XP_048263260.1  potassium voltage-gated channel protein Shaker isoform X3

    UniProtKB/TrEMBL
    A0A9C6SMD3

  7. XM_048407304.1 → XP_048263261.1  potassium voltage-gated channel protein Shaker isoform X3

    UniProtKB/TrEMBL
    A0A9C6SMD3

  8. XM_048407301.1 → XP_048263258.1  potassium voltage-gated channel protein Shaker isoform X2

    UniProtKB/TrEMBL
    A0A9C6SLP8

  9. XM_020863837.2 → XP_020719496.1  potassium voltage-gated channel protein Shaker isoform X7

    UniProtKB/TrEMBL
    A0A9B7HZS5
    Conserved Domains (2) summary
    pfam00520
    Location:205 → 455
    Ion_trans; Ion transport protein
    pfam02214
    Location:66 → 153
    BTB_2; BTB/POZ domain

  10. XM_048407298.1 → XP_048263255.1  potassium voltage-gated channel protein Shaker isoform X2

    UniProtKB/TrEMBL
    A0A9C6SLP8

  11. XM_048407299.1 → XP_048263256.1  potassium voltage-gated channel protein Shaker isoform X2

    UniProtKB/TrEMBL
    A0A9C6SLP8

  12. XM_048407297.1 → XP_048263254.1  potassium voltage-gated channel protein Shaker isoform X2

    UniProtKB/TrEMBL
    A0A9C6SLP8

  13. XM_048407296.1 → XP_048263253.1  potassium voltage-gated channel protein Shaker isoform X1

    UniProtKB/TrEMBL
    A0A9C6W4G6

  14. XM_012309719.3 → XP_012165109.1  potassium voltage-gated channel protein Shaker isoform X6

    UniProtKB/TrEMBL
    A0A9B2ML26
    Conserved Domains (4) summary
    smart00225
    Location:85 → 173
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:260 → 474
    Ion_trans; Ion transport protein
    pfam02214
    Location:85 → 172
    BTB_2; BTB/POZ domain
    pfam07885
    Location:389 → 465
    Ion_trans_2; Ion channel

  15. XM_020863839.2 → XP_020719498.1  potassium voltage-gated channel protein Shaker isoform X11

    UniProtKB/TrEMBL
    A0A9B7CWB7
    Conserved Domains (2) summary
    pfam00520
    Location:186 → 436
    Ion_trans; Ion transport protein
    cl38908
    Location:45 → 171
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  16. XM_048407317.1 → XP_048263274.1  potassium voltage-gated channel protein Shaker isoform X11

    UniProtKB/TrEMBL
    A0A9B7CWB7
    Conserved Domains (2) summary
    pfam00520
    Location:186 → 436
    Ion_trans; Ion transport protein
    cl38908
    Location:45 → 171
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  17. XM_012309724.3 → XP_012165114.1  potassium voltage-gated channel protein Shaker isoform X8

    See identical proteins and their annotated locations for XP_012165114.1

    UniProtKB/TrEMBL
    A0A9C6SC83
    Conserved Domains (2) summary
    pfam00520
    Location:202 → 452
    Ion_trans; Ion transport protein
    cl38908
    Location:61 → 187
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  18. XM_048407314.1 → XP_048263271.1  potassium voltage-gated channel protein Shaker isoform X8

    UniProtKB/TrEMBL
    A0A9C6SC83
    Conserved Domains (2) summary
    pfam00520
    Location:202 → 452
    Ion_trans; Ion transport protein
    cl38908
    Location:61 → 187
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  19. XM_048407313.1 → XP_048263270.1  potassium voltage-gated channel protein Shaker isoform X8

    UniProtKB/TrEMBL
    A0A9C6SC83
    Conserved Domains (2) summary
    pfam00520
    Location:202 → 452
    Ion_trans; Ion transport protein
    cl38908
    Location:61 → 187
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  20. XM_020863838.2 → XP_020719497.1  potassium voltage-gated channel protein Shaker isoform X8

    UniProtKB/TrEMBL
    A0A9C6SC83
    Conserved Domains (2) summary
    pfam00520
    Location:202 → 452
    Ion_trans; Ion transport protein
    cl38908
    Location:61 → 187
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  21. XM_048407312.1 → XP_048263269.1  potassium voltage-gated channel protein Shaker isoform X8

    UniProtKB/TrEMBL
    A0A9C6SC83
    Conserved Domains (2) summary
    pfam00520
    Location:202 → 452
    Ion_trans; Ion transport protein
    cl38908
    Location:61 → 187
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  22. XM_012309726.3 → XP_012165116.1  potassium voltage-gated channel protein Shaker isoform X10

    UniProtKB/TrEMBL
    A0A9B2MNX7
    Conserved Domains (4) summary
    smart00225
    Location:47 → 135
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:222 → 436
    Ion_trans; Ion transport protein
    pfam02214
    Location:47 → 134
    BTB_2; BTB/POZ domain
    pfam07885
    Location:351 → 427
    Ion_trans_2; Ion channel

  23. XM_048407308.1 → XP_048263265.1  potassium voltage-gated channel protein Shaker isoform X4

    UniProtKB/TrEMBL
    A0A9C6VX20

  24. XM_048407309.1 → XP_048263266.1  potassium voltage-gated channel protein Shaker isoform X4

    UniProtKB/TrEMBL
    A0A9C6VX20

  25. XM_048407315.1 → XP_048263272.1  potassium voltage-gated channel protein Shaker isoform X9

    UniProtKB/TrEMBL
    A0A9C6SJC5

  26. XM_048407316.1 → XP_048263273.1  potassium voltage-gated channel protein Shaker isoform X12

    UniProtKB/TrEMBL
    A0A9C6SDC8

RNA

  1. XR_007224638.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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