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    LOC100494783 uncharacterized LOC100494783 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100494783, updated on 14-Nov-2024

    Summary

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    Official Symbol
    LOC100494783provided by Xenbase
    Official Full Name
    uncharacterized LOC100494783provided by Xenbase
    Primary source
    Xenbase:XB-GENE-29082375
    See related
    AllianceGenome:Xenbase:XB-GENE-29082375
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to enable phospholipid binding activity. Predicted to act upstream of or within actin filament capping. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See LOC100494783 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (2109169..2150717)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683941.1 (1064..11433)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 63B Neighboring gene calpain 11, (mu/I) large subunit a Neighboring gene nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon Neighboring gene adhesive plaque matrix protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament capping IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100494783

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      2109169..2150717
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031902042.1 → XP_031757902.1  uncharacterized protein LOC100494783

      UniProtKB/TrEMBL
      A0A8J1JJ52
      Conserved Domains (3) summary
      cd00176
      Location:14 → 219
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:8 → 671
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cl17171
      Location:1460 → 1560
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein Strain
    Heading Accession and Version

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