U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.
    • Unknown field was ignored: [has_clinical].

    LOC100494300 E3 ubiquitin-protein ligase TRIM39-like [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100494300, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LOC100494300provided by Xenbase
    Official Full Name
    E3 ubiquitin-protein ligase TRIM39-likeprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-29082127
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Annotation information
    Annotation category: partial on reference assembly
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100494300 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (214384231..214385484, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683539.1 (86270..88222, complement)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25 Neighboring gene E3 ubiquitin-protein ligase TRIM7-like Neighboring gene uncharacterized LOC116408239 Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase TRIM39-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      214384231..214385484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002941329.5 → XP_002941375.5  E3 ubiquitin-protein ligase TRIM39-like

      UniProtKB/TrEMBL
      A0A8J0QV25
      Conserved Domains (3) summary
      smart00502
      Location:60 → 173
      BBC; B-Box C-terminal domain
      cd12891
      Location:249 → 416
      SPRY_PRY_C-I_2; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM14-like, TRIM16-like, TRIM25-like, TRIM47-like, TRIM65 and RNF135, and stonustoxin
      cd19769
      Location:15 → 61
      Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials