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LOC100488472 B-cell receptor CD22 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100488472, updated on 17-Aug-2024

Summary

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Official Symbol
LOC100488472provided by Xenbase
Official Full Name
B-cell receptor CD22provided by Xenbase
Primary source
Xenbase:XB-GENE-29079219
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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See LOC100488472 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (123194150..123210875)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683415.1 (633370..646097)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene sialoadhesin-like Neighboring gene B-cell receptor CD22 Neighboring gene B-cell receptor CD22 Neighboring gene B-cell receptor CD22-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
B-cell receptor CD22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    123194150..123210875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031906410.1 → XP_031762270.1  B-cell receptor CD22

    UniProtKB/TrEMBL
    A0A8J1JZ29
    Conserved Domains (4) summary
    smart00409
    Location:430 → 506
    IG; Immunoglobulin
    pfam13895
    Location:254 → 318
    Ig_2; Immunoglobulin domain
    cd00096
    Location:36 → 40
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:31 → 116
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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