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    ppp1r27a protein phosphatase 1, regulatory subunit 27a [ Danio rerio (zebrafish) ]

    Gene ID: 100332066, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ppp1r27aprovided by ZNC
    Official Full Name
    protein phosphatase 1, regulatory subunit 27aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131121-348
    See related
    Ensembl:ENSDARG00000116806 AllianceGenome:ZFIN:ZDB-GENE-131121-348
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-43f19.2
    Summary
    Orthologous to human PPP1R27 (protein phosphatase 1 regulatory subunit 27). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See ppp1r27a in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (59851987..59862670)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (59560877..59568130)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene neuronal pentraxin 1 like Neighboring gene platelet and endothelial cell adhesion molecule 1a Neighboring gene MAPK regulated corepressor interacting protein 1 Neighboring gene Aly/REF export factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The Transcriptome of the Zebrafish Embryo After Chemical Exposure: A Meta-Analysis. Schüttler A, et al. Toxicol Sci, 2017 Jun 1. PMID 28329862, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein phosphatase 1 regulatory subunit 27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      59851987..59862670
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002661256.7 → XP_002661302.2  protein phosphatase 1 regulatory subunit 27

      UniProtKB/TrEMBL
      A0A2R8QPQ5, A0A8M1RLQ5
      Related
      ENSDARP00000154789.1, ENSDART00000180997.1
      Conserved Domains (3) summary
      cd00204
      Location:135 → 218
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13637
      Location:137 → 190
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:136 → 167
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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