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    LINC02787 long intergenic non-protein coding RNA 2787 [ Homo sapiens (human) ]

    Gene ID: 105378852, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02787provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2787provided by HGNC
    Primary source
    HGNC:HGNC:54308
    See related
    AllianceGenome:HGNC:54308
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02787 in Genome Data Viewer
    Location:
    1p22.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (90511987..90547930, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (90356381..90392313, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378850 Neighboring gene MPRA-validated peak313 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:90876847-90878046 Neighboring gene uncharacterized LOC105378851 Neighboring gene NANOG hESC enhancer GRCh37_chr1:90967710-90968211 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:91027459-91027961 Neighboring gene small nucleolar RNA, C/D box 3G Neighboring gene NANOG hESC enhancer GRCh37_chr1:91149838-91150358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:91171602-91172396 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:91176541-91177109 Neighboring gene BarH like homeobox 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      90511987..90547930 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001737796.1 RNA Sequence

    2. XR_947593.1 RNA Sequence

    3. XR_947592.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      90356381..90392313 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007070444.1 RNA Sequence

    2. XR_007070443.1 RNA Sequence

    3. XR_007070442.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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