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    LINC01997 long intergenic non-protein coding RNA 1997 [ Homo sapiens (human) ]

    Gene ID: 105374201, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01997provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1997provided by HGNC
    Primary source
    HGNC:HGNC:52831
    See related
    AllianceGenome:HGNC:52831
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01997 in Genome Data Viewer
    Location:
    3q26.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (169003011..169006943)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (171786981..171790913)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein L21 pseudogene 43 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:168647847-168648347 Neighboring gene long intergenic non-protein coding RNA 2082 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:168720282-168721053 Neighboring gene uncharacterized LOC107986051 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14872 Neighboring gene MDS1 and EVI1 complex locus Neighboring gene Sharpr-MPRA regulatory region 14107 Neighboring gene VISTA enhancer hs1433 Neighboring gene uncharacterized LOC124909454

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      169003011..169006943
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_924689.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      171786981..171790913
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007073265.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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