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    LINC01713 long intergenic non-protein coding RNA 1713 [ Homo sapiens (human) ]

    Gene ID: 105372516, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01713provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1713provided by HGNC
    Primary source
    HGNC:HGNC:52500
    See related
    AllianceGenome:HGNC:52500
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01713 in Genome Data Viewer
    Location:
    20p12.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (6730741..6736136, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (6771923..6777318, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (6711388..6716783, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904866 Neighboring gene cancer susceptibility 20 Neighboring gene Sharpr-MPRA regulatory region 6239 Neighboring gene MPRA-validated peak4139 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:6571340-6572539 Neighboring gene Sharpr-MPRA regulatory region 6314 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:6593736-6594935 Neighboring gene OCT4 hESC enhancer GRCh37_chr20:6617898-6618411 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:6678222-6679421 Neighboring gene Sharpr-MPRA regulatory region 10991 Neighboring gene BMP2 5' regulatory region Neighboring gene uncharacterized LOC105372517 Neighboring gene bone morphogenetic protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146909.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL035668, BG822004

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      6730741..6736136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      6771923..6777318 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)