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    LINC00571 long intergenic non-protein coding RNA 571 [ Homo sapiens (human) ]

    Gene ID: 100874188, updated on 17-Jun-2024

    Summary

    Official Symbol
    LINC00571provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 571provided by HGNC
    Primary source
    HGNC:HGNC:43721
    See related
    Ensembl:ENSG00000223685 AllianceGenome:HGNC:43721
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in thyroid (RPKM 1.2), kidney (RPKM 0.4) and 14 other tissues See more
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    Genomic context

    See LINC00571 in Genome Data Viewer
    Location:
    13q13.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (38050817..38143232, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (37270427..37362847, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (38624954..38717369, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily C member 4 Neighboring gene uncharacterized LOC124903160 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:38488805-38489357 Neighboring gene long intergenic non-protein coding RNA 2334 Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5272 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7595 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:38924325-38924539 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:38938261-38938769 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5273 Neighboring gene ubiquitin fold modifier 1 Neighboring gene uncharacterized LOC105370167 Neighboring gene long intergenic non-protein coding RNA 437

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047500.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137245, BM023585
      Related
      ENST00000434565.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      38050817..38143232 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      37270427..37362847 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)