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    HMGB3P3 high mobility group box 3 pseudogene 3 [ Homo sapiens (human) ]

    Gene ID: 100419949, updated on 17-Sep-2024

    Summary

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    Official Symbol
    HMGB3P3provided by HGNC
    Official Full Name
    high mobility group box 3 pseudogene 3provided by HGNC
    Primary source
    HGNC:HGNC:39102
    See related
    Ensembl:ENSG00000250730 AllianceGenome:HGNC:39102
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See HMGB3P3 in Genome Data Viewer
    Location:
    5p15.32
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (6289807..6290613)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (6218485..6219291)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (6289920..6290726)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374634 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22327 Neighboring gene uncharacterized LOC105374636 Neighboring gene Sharpr-MPRA regulatory region 9370 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15895 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:5943193-5944392 Neighboring gene NANOG hESC enhancer GRCh37_chr5:6038201-6038702 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:6158863-6160062 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22328 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:6315844-6316069 Neighboring gene long intergenic non-protein coding RNA 2145 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:6343159-6343659 Neighboring gene Sharpr-MPRA regulatory region 13881 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:6367530-6367697 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22329 Neighboring gene mediator complex subunit 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Retroposed copies of the HMG genes: a window to genome dynamics. Strichman-Almashanu LZ, et al. Genome Res, 2003 May. PMID 12727900, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_024651.1 

      Range
      101..907
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      6289807..6290613
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      6218485..6219291
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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