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    HMGA1P1 high mobility group AT-hook 1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 203477, updated on 17-Sep-2024

    Summary

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    Official Symbol
    HMGA1P1provided by HGNC
    Official Full Name
    high mobility group AT-hook 1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:13321
    See related
    AllianceGenome:HGNC:13321
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HMGA1L1; HMGIYL1
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    Genomic context

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    See HMGA1P1 in Genome Data Viewer
    Location:
    Xp21.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (26747924..26749703)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (26335225..26337003)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (26766041..26767820)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene VENTX pseudogene 8 Neighboring gene VENT homeobox pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:26622679-26622905 Neighboring gene ribosomal protein L7 pseudogene 58 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:26773077-26773647 Neighboring gene RNA, U1 small nuclear 142, pseudogene Neighboring gene uncharacterized LOC124905231

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel high mobility group protein gene is a candidate for Xp22 abnormalities in uterine leiomyomas and other benign tumors. Blank C, et al. Cancer Genet Cytogenet, 2000 Sep. PMID 11063803
    2. Significant correlation between the breakpoints of rare clonal aberrations in benign solid tumors and the assignment of HMGIY retropseudogenes. Rogalla P, et al. Cancer Genet Cytogenet, 2001 Oct 1. PMID 11672774
    3. Retroposed copies of the HMG genes: a window to genome dynamics. Strichman-Almashanu LZ, et al. Genome Res, 2003 May. PMID 12727900, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • HMGIY-related retropseudogene
    • high mobility group AT-hook 1-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_002324.4 

      Range
      101..1880
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      26747924..26749703
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      26335225..26337003
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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