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    BZIP36 bZIP transcription factor bZIP36 [ Glycine max (soybean) ]

    Gene ID: 548004, updated on 7-Dec-2023

    Summary

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    Gene symbol
    BZIP36
    Gene description
    bZIP transcription factor bZIP36
    Locus tag
    GLYMA_18G117100v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    SOYSTF1A
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    Genomic context

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    See BZIP36 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (14316895..14320491, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (14387822..14391416, complement)

    Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102660201 Neighboring gene serine--glyoxylate aminotransferase-like Neighboring gene small nucleolar RNA R71 Neighboring gene pre-mRNA-splicing factor CWC22 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. STF1 is a novel TGACG-binding factor with a zinc-finger motif and a bZIP domain which heterodimerizes with GBF proteins. Cheong YH, et al. Plant J, 1998 Jul. PMID 9721678
    2. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Liao Y, et al. Planta, 2008 Jul. PMID 18365246

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in red or far-red light signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of photomorphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to far red light IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to red light IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bZIP transcription factor bZIP36
    Names
    TGACG-motif binding factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001250343.2 → NP_001237272.2  bZIP transcription factor bZIP36

      Status: VALIDATED

      Source sequence(s)
      ACUP04006260, L28003
      UniProtKB/TrEMBL
      I1N137, Q39895
      Conserved Domains (3) summary
      PLN02400
      Location:1 → 195
      PLN02400; cellulose synthase
      cd14704
      Location:251 → 302
      bZIP_HY5-like; Basic leucine zipper (bZIP) domain of Plant Elongated/Long Hypocotyl5 (HY5)-like transcription factors and similar proteins: a DNA-binding and dimerization domain
      cl41730
      Location:186 → 249
      KLF9_13_N-like; Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      14316895..14320491 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006601801.3 → XP_006601864.1  bZIP transcription factor bZIP36 isoform X1

      UniProtKB/TrEMBL
      K7MRF6, Q39895
      Conserved Domains (3) summary
      PLN02400
      Location:1 → 185
      PLN02400; cellulose synthase
      cd14704
      Location:241 → 292
      bZIP_HY5-like; Basic leucine zipper (bZIP) domain of Plant Elongated/Long Hypocotyl5 (HY5)-like transcription factors and similar proteins: a DNA-binding and dimerization domain
      cl41730
      Location:176 → 239
      KLF9_13_N-like; Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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