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    LOC100803911 auxin response factor 9 [ Glycine max (soybean) ]

    Gene ID: 100803911, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100803911
    Gene description
    auxin response factor 9
    Locus tag
    GLYMA_01G103500v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100803911 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (35187514..35192417, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (34601050..34605676, complement)

    Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene hsp70 nucleotide exchange factor fes1 Neighboring gene uncharacterized LOC102670216 Neighboring gene uncharacterized LOC102670476 Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin response factor 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

      Range
      35187514..35192417 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006573254.3 → XP_006573317.1  auxin response factor 9

      UniProtKB/TrEMBL
      A0A0R0KGA0, K7K310
      Conserved Domains (3) summary
      pfam02309
      Location:585 → 659
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:126 → 226
      B3; B3 DNA binding domain
      pfam06507
      Location:252 → 333
      Auxin_resp; Auxin response factor

    RNA

    1. XR_001387768.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases