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    PHR14 MYB-CC domain-containing transcription factor PHR14 [ Glycine max (soybean) ]

    Gene ID: 100784511, updated on 7-Dec-2023

    Summary

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    Gene symbol
    PHR14
    Gene description
    MYB-CC domain-containing transcription factor PHR14
    Locus tag
    GLYMA_09G017400v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    GmPHR14
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    Genomic context

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    See PHR14 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (1365472..1370101)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (1366658..1371286)

    Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase WAVH2 Neighboring gene MYB-CC domain-containing transcription factor PHR13 Neighboring gene uncharacterized LOC100787162 Neighboring gene uncharacterized protein At3g52155, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GmPHR25, a GmPHR member up-regulated by phosphate starvation, controls phosphate homeostasis in soybean. Xue YB, et al. J Exp Bot, 2017 Oct 13. PMID 28992334, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MYB-CC domain-containing transcription factor PHR14
    Names
    myb-related transcription factor GCC7-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001253972.2 → NP_001240901.1  MYB-CC domain-containing transcription factor PHR14

      See identical proteins and their annotated locations for NP_001240901.1

      Status: VALIDATED

      Source sequence(s)
      ACUP04003049, BT095812, EV272619, FK004522
      UniProtKB/TrEMBL
      C6TCK5, C6TDZ4
      Conserved Domains (2) summary
      TIGR01557
      Location:19 → 75
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:107 → 152
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      1365472..1370101
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006586613.3 → XP_006586676.1  MYB-CC domain-containing transcription factor PHR14 isoform X4

      UniProtKB/TrEMBL
      A0A0R0I6G9, C6TCK5
      Conserved Domains (2) summary
      TIGR01557
      Location:19 → 75
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:106 → 151
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    2. XM_006586610.3 → XP_006586673.1  MYB-CC domain-containing transcription factor PHR14 isoform X1

      UniProtKB/TrEMBL
      C6TCK5, K7LBB2
      Conserved Domains (2) summary
      TIGR01557
      Location:49 → 105
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:137 → 182
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    3. XM_006586611.3 → XP_006586674.1  MYB-CC domain-containing transcription factor PHR14 isoform X2

      UniProtKB/TrEMBL
      C6TCK5
      Conserved Domains (2) summary
      TIGR01557
      Location:49 → 105
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:136 → 181
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    4. XM_041004792.1 → XP_040860726.1  MYB-CC domain-containing transcription factor PHR14 isoform X4

      UniProtKB/TrEMBL
      A0A0R0I6G9, C6TCK5
      Conserved Domains (2) summary
      TIGR01557
      Location:19 → 75
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:106 → 151
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    5. XM_006586612.3 → XP_006586675.1  MYB-CC domain-containing transcription factor PHR14 isoform X3

      See identical proteins and their annotated locations for XP_006586675.1

      UniProtKB/TrEMBL
      C6TCK5, C6TDZ4
      Conserved Domains (2) summary
      TIGR01557
      Location:19 → 75
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:107 → 152
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    6. XM_041004789.1 → XP_040860723.1  MYB-CC domain-containing transcription factor PHR14 isoform X3

      UniProtKB/TrEMBL
      C6TCK5, C6TDZ4
      Conserved Domains (2) summary
      TIGR01557
      Location:19 → 75
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:107 → 152
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    7. XM_014779564.3 → XP_014635050.1  MYB-CC domain-containing transcription factor PHR14 isoform X1

      UniProtKB/TrEMBL
      C6TCK5, K7LBB2
      Conserved Domains (2) summary
      TIGR01557
      Location:49 → 105
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:137 → 182
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    8. XM_041004793.1 → XP_040860727.1  MYB-CC domain-containing transcription factor PHR14 isoform X4

      UniProtKB/TrEMBL
      A0A0R0I6G9, C6TCK5
      Conserved Domains (2) summary
      TIGR01557
      Location:19 → 75
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:106 → 151
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    9. XM_041004788.1 → XP_040860722.1  MYB-CC domain-containing transcription factor PHR14 isoform X1

      UniProtKB/TrEMBL
      C6TCK5, K7LBB2
      Conserved Domains (2) summary
      TIGR01557
      Location:49 → 105
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:137 → 182
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    10. XM_041004790.1 → XP_040860724.1  MYB-CC domain-containing transcription factor PHR14 isoform X3

      UniProtKB/TrEMBL
      C6TCK5, C6TDZ4
      Conserved Domains (2) summary
      TIGR01557
      Location:19 → 75
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:107 → 152
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    11. XM_041004791.1 → XP_040860725.1  MYB-CC domain-containing transcription factor PHR14 isoform X3

      UniProtKB/TrEMBL
      C6TCK5, C6TDZ4
      Conserved Domains (2) summary
      TIGR01557
      Location:19 → 75
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:107 → 152
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    Nucleotide Protein
    Heading Accession and Version

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