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    EREB ethylene responsive protein [ Glycine max (soybean) ]

    Gene ID: 547957, updated on 7-Dec-2023

    Summary

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    Gene symbol
    EREB
    Gene description
    ethylene responsive protein
    Locus tag
    GLYMA_16G012600v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    GmERF054; GmERF058
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    Genomic context

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    See EREB in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 16 NC_038252.2 (1082212..1085700, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 16 NC_038252.1 (1082832..1086320, complement)

    Chromosome 16 - NC_038252.2Genomic Context describing neighboring genes Neighboring gene GDSL lipase Neighboring gene GDSL esterase/lipase 5 Neighboring gene subtilisin-like protease SBT1.5 Neighboring gene uncharacterized LOC100816015

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.). Zhang G, et al. J Exp Bot, 2008. PMID 18832187, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ethylene-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene responsive protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001349033.1 → NP_001335962.1  ethylene responsive protein

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      ACUP04005603, AK246023
      UniProtKB/TrEMBL
      A0A0R0FJQ7, I1MK59
      Conserved Domains (1) summary
      smart00380
      Location:114 → 171
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

    2. NM_001349034.1 → NP_001335963.1  ethylene responsive protein

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      ACUP04005603, AK245781
      UniProtKB/TrEMBL
      A0A0R0FJQ7, I1MK59
      Conserved Domains (1) summary
      smart00380
      Location:114 → 171
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038252.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      1082212..1085700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001249649.1: Suppressed sequence

      Description
      NM_001249649.1: This RefSeq was removed because currently there is insufficient support for the transcript.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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