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    WRKY14 WRKY transcription factor 14 [ Glycine max (soybean) ]

    Gene ID: 100127371, updated on 7-Dec-2023

    Summary

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    Gene symbol
    WRKY14
    Gene description
    WRKY transcription factor 14
    Locus tag
    GLYMA_11G053100v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    WRKY; SoyWRKY15d
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    Genomic context

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    See WRKY14 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (3989241..3990902)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (3994660..3996321)

    Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene UPF0481 protein At3g47200-like Neighboring gene glycosyltransferase Neighboring gene xylan biosynthesis protein IRX15-like protein Neighboring gene uncharacterized LOC100305922

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential expression of a WRKY gene between wild and cultivated soybeans correlates to seed size. Gu Y, et al. J Exp Bot, 2017 May 17. PMID 28472462, Free PMC Article
    2. Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants. Zhou QY, et al. Plant Biotechnol J, 2008 Jun. PMID 18384508
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WRKY transcription factor 14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001317569.2 → NP_001304498.2  WRKY transcription factor 14 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
      Source sequence(s)
      ACUP04003797, KM587699
      UniProtKB/TrEMBL
      A0A0B4SXC9
      Conserved Domains (2) summary
      smart00774
      Location:248 → 305
      WRKY; DNA binding domain
      pfam10533
      Location:210 → 245
      Plant_zn_clust; Plant zinc cluster domain

    2. NM_001361262.1 → NP_001348191.1  WRKY transcription factor 14 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      ACUP04003797
      UniProtKB/TrEMBL
      A0A0B4SXC9, I1LHB2
      Conserved Domains (2) summary
      smart00774
      Location:249 → 306
      WRKY; DNA binding domain
      pfam10533
      Location:204 → 246
      Plant_zn_clust; Plant zinc cluster domain

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      3989241..3990902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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