U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LEC1-A transcription factor LEC1-A [ Glycine max (soybean) ]

    Gene ID: 100194424, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LEC1-A
    Gene description
    transcription factor LEC1-A
    Locus tag
    GLYMA_07G268100v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    LEC1a; LEC1-1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LEC1-A in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 7 NC_038243.2 (44451143..44453618)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 7 NC_038243.1 (44131045..44133540)

    Chromosome 7 - NC_038243.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100797139 Neighboring gene nudix hydrolase 2-like Neighboring gene sister chromatid cohesion protein PDS5 homolog A Neighboring gene uncharacterized LOC102667272

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Combinatorial interactions of the LEC1 transcription factor specify diverse developmental programs during soybean seed development. Jo L, et al. Proc Natl Acad Sci U S A, 2020 Jan 14. PMID 31892538, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor LEC1-A
    Names
    HAP3 protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001249696.2 → NP_001236625.1  transcription factor LEC1-A

      See identical proteins and their annotated locations for NP_001236625.1

      Status: VALIDATED

      Source sequence(s)
      ACUP04002763
      UniProtKB/TrEMBL
      B5KMS8, C6SYP5
      Conserved Domains (1) summary
      pfam00808
      Location:61 → 126
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038243.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      44451143..44453618
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041016821.1 → XP_040872755.1  transcription factor LEC1-A isoform X1

      UniProtKB/TrEMBL
      C6SYP5
      Conserved Domains (1) summary
      pfam00808
      Location:36 → 101
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases