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    MYB55 MYB transcription factor [ Glycine max (soybean) ]

    Gene ID: 778173, updated on 7-Dec-2023

    Summary

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    Gene symbol
    MYB55
    Gene description
    MYB transcription factor
    Locus tag
    GLYMA_09G029300v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    MYB153
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    Genomic context

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    See MYB55 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (2388549..2394404)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (2391299..2397154)

    Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene probable folate-biopterin transporter 7 Neighboring gene uncharacterized LOC100527038 Neighboring gene ent-kaurenoic acid oxidase 2 Neighboring gene protein WHAT'S THIS FACTOR 9, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library. Umezawa T, et al. DNA Res, 2008 Dec. PMID 18927222, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MYB transcription factor
    Names
    MYB transcription factor MYB153
    MYB transcription factor MYB55
    telomere repeat-binding factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001354190.1 → NP_001341119.1  MYB transcription factor isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
      Source sequence(s)
      ACUP04003051, BT098318, BW655429, BW655430
      UniProtKB/TrEMBL
      I1L0K3, Q0PJL7
      Conserved Domains (2) summary
      smart00526
      Location:118 → 180
      H15; Domain in histone families 1 and 5
      cd11660
      Location:6 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    2. NM_001354191.1 → NP_001341120.1  MYB transcription factor isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      ACUP04003051
      UniProtKB/TrEMBL
      I1L0K3, Q0PJL7
      Conserved Domains (2) summary
      smart00526
      Location:118 → 180
      H15; Domain in histone families 1 and 5
      cd11660
      Location:6 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    3. NM_001354192.1 → NP_001341121.1  MYB transcription factor isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an exon in the coding region, which results in a shorter protein, compared to variant 1 and 2.
      Source sequence(s)
      ACUP04003051
      UniProtKB/TrEMBL
      I1L0K2, I1MG89
      Conserved Domains (2) summary
      cd11660
      Location:6 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl00073
      Location:118 → 155
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      2388549..2394404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041004841.1 → XP_040860775.1  MYB transcription factor isoform X1

      UniProtKB/TrEMBL
      I1L0K2, I1MG89
      Conserved Domains (2) summary
      cd11660
      Location:6 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
      cl00073
      Location:118 → 155
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    Nucleotide Protein
    Heading Accession and Version

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