U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    BZIP87 putative bZIP domain class transcription factor [ Glycine max (soybean) ]

    Gene ID: 100101912, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    BZIP87
    Gene description
    putative bZIP domain class transcription factor
    Locus tag
    GLYMA_08G265600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    bZIP92
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See BZIP87 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (31290417..31298203)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (31876316..31884165)

    Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC102663192 Neighboring gene growth-regulating factor 6-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Liao Y, et al. Planta, 2008 Jul. PMID 18365246
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    bZIP transcription factor 16
    Names
    bZIP transcription factor bZIP92
    transcription factor HBP-1a
    transcription factor bZIP87

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      31290417..31298203
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006585803.4 → XP_006585866.1  bZIP transcription factor 16 isoform X1

      See identical proteins and their annotated locations for XP_006585866.1

      UniProtKB/TrEMBL
      I1KWX8
      Conserved Domains (4) summary
      smart00338
      Location:308 → 372
      BRLZ; basic region leucin zipper
      cd14702
      Location:313 → 363
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 96
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:135 → 275
      MFMR_assoc; Disordered region downstream of MFMR

    2. XM_014779260.3 → XP_014634746.1  bZIP transcription factor 16 isoform X2

      Conserved Domains (4) summary
      smart00338
      Location:288 → 352
      BRLZ; basic region leucin zipper
      cd14702
      Location:293 → 343
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 96
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:115 → 255
      MFMR_assoc; Disordered region downstream of MFMR

    3. XM_041017818.1 → XP_040873752.1  bZIP transcription factor 16 isoform X3

      UniProtKB/TrEMBL
      I1KWY1
      Conserved Domains (2) summary
      smart00338
      Location:258 → 322
      BRLZ; basic region leucin zipper
      cd14702
      Location:263 → 313
      bZIP_plant_GBF1; coiled coil [structural motif]

    4. XM_006585804.4 → XP_006585867.1  bZIP transcription factor 16 isoform X4

      UniProtKB/TrEMBL
      I1KWY1, K7L928
      Conserved Domains (4) summary
      smart00338
      Location:239 → 303
      BRLZ; basic region leucin zipper
      cd14702
      Location:244 → 294
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 27
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:66 → 206
      MFMR_assoc; Disordered region downstream of MFMR
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.