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    LOC778122 putative bZIP domain class transcription factor [ Glycine max (soybean) ]

    Gene ID: 778122, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC778122
    Gene description
    putative bZIP domain class transcription factor
    Locus tag
    GLYMA_09G208500v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    bZIP86; bZIP102
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    Genomic context

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    See LOC778122 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (44172210..44181100)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (43282946..43291902)

    Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 30-like Neighboring gene uncharacterized LOC100814434 Neighboring gene uncharacterized LOC102663637 Neighboring gene uncharacterized LOC102663989

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Liao Y, et al. Planta, 2008 Jul. PMID 18365246
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative bZIP domain class transcription factor
    Names
    bZIP transcription factor bZIP86
    transcription factor HBP-1a
    transcription factor bZIP102

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358768.1 → NP_001345697.1  putative bZIP domain class transcription factor

      Status: VALIDATED

      Source sequence(s)
      ACUP04003369
      UniProtKB/TrEMBL
      I1J4P9, I1L516
      Conserved Domains (4) summary
      smart00338
      Location:308 → 372
      BRLZ; basic region leucin zipper
      cd14702
      Location:313 → 363
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 97
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:136 → 275
      MFMR_assoc; Disordered region downstream of MFMR

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      44172210..44181100
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014762310.3 → XP_014617796.1  putative bZIP domain class transcription factor isoform X1

      UniProtKB/TrEMBL
      I1J4P9
      Conserved Domains (4) summary
      smart00338
      Location:306 → 370
      BRLZ; basic region leucin zipper
      cd14702
      Location:311 → 361
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 95
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:134 → 273
      MFMR_assoc; Disordered region downstream of MFMR
    Nucleotide Protein
    Heading Accession and Version

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