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    LOC100500248 WRKY DNA -binding domain-containing protein [ Glycine max (soybean) ]

    Gene ID: 100500248, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100500248
    Gene description
    WRKY DNA -binding domain-containing protein
    Locus tag
    GLYMA_05G184500v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100500248 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (37150551..37153665, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (37142882..37145996, complement)

    Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102663813 Neighboring gene small GTPase LIP1 Neighboring gene ras-related protein Rab7 Neighboring gene iron-sulfur assembly protein IscA, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC100500248

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001248384.2 → NP_001235313.2  uncharacterized protein LOC100500248

      Status: VALIDATED

      Source sequence(s)
      BT091158, EV275351, FK012859
      UniProtKB/TrEMBL
      C6T152, I1K4R6
      Conserved Domains (1) summary
      smart00774
      Location:111 → 167
      WRKY; DNA binding domain

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      37150551..37153665 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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