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    LOC100820151 transcription factor PIF3 [ Glycine max (soybean) ]

    Gene ID: 100820151, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100820151
    Gene description
    transcription factor PIF3
    Locus tag
    GLYMA_10G142600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100820151 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (37858629..37863483, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (37701453..37706362, complement)

    Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121172877 Neighboring gene titin Neighboring gene hydrophobic protein RCI2B Neighboring gene anaphase-promoting complex subunit 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor PIF3
    Names
    bHLH transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      37858629..37863483 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006589038.4 → XP_006589101.1  transcription factor PIF3

      UniProtKB/TrEMBL
      I1LAY5, I1LAY6
      Conserved Domains (1) summary
      cd00083
      Location:457 → 515
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    2. XM_014763164.3 → XP_014618650.1  transcription factor PIF3

      UniProtKB/TrEMBL
      I1LAY5, I1LAY6
      Conserved Domains (1) summary
      cd00083
      Location:457 → 515
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    Nucleotide Protein
    Heading Accession and Version

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