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    LOC100783502 basic pentacysteine 6 [ Glycine max (soybean) ]

    Gene ID: 100783502, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100783502
    Gene description
    basic pentacysteine 6
    Locus tag
    GLYMA_04G026300v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100783502 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (2113543..2117746, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (2126587..2130760, complement)

    Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor 29 Neighboring gene small nucleolar RNA snoR64a Neighboring gene aldehyde oxidase GLOX-like Neighboring gene aldehyde oxidase GLOX1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to ethylene IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basic pentacysteine 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001255529.3 → NP_001242458.2  basic pentacysteine 6

      Status: VALIDATED

      Source sequence(s)
      ACUP04001279, BT093794
      UniProtKB/TrEMBL
      C6T8J3, I1JT52
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 338
      GAGA_bind; GAGA binding protein-like family

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

      Range
      2113543..2117746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006577741.4 → XP_006577804.1  basic pentacysteine 6 isoform X1

      See identical proteins and their annotated locations for XP_006577804.1

      UniProtKB/TrEMBL
      C6T8J3, I1JT52
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 338
      GAGA_bind; GAGA binding protein-like family

    2. XM_041014513.1 → XP_040870447.1  basic pentacysteine 6 isoform X1

      UniProtKB/TrEMBL
      C6T8J3, I1JT52
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 338
      GAGA_bind; GAGA binding protein-like family

    3. XM_041014512.1 → XP_040870446.1  basic pentacysteine 6 isoform X1

      UniProtKB/TrEMBL
      C6T8J3, I1JT52
      Conserved Domains (1) summary
      pfam06217
      Location:1 → 338
      GAGA_bind; GAGA binding protein-like family
    Nucleotide Protein
    Heading Accession and Version

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