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    Speer1h spermatogenesis associated glutamate (E)-rich protein 1H [ Mus musculus (house mouse) ]

    Gene ID: 623898, updated on 17-Aug-2024

    Summary

    Official Symbol
    Speer1hprovided by MGI
    Official Full Name
    spermatogenesis associated glutamate (E)-rich protein 1Hprovided by MGI
    Primary source
    MGI:MGI:3644247
    See related
    Ensembl:ENSMUSG00000091903 AllianceGenome:MGI:3644247
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm6460; EG623898
    Expression
    Restricted expression toward testis adult (RPKM 56.5) See more
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    Genomic context

    See Speer1h in Genome Data Viewer
    Location:
    5 A1; 5 3.87 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (11644923..11649447)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (11594956..11599480)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52803 Neighboring gene STARR-positive B cell enhancer mm9_chr5:11503015-11503316 Neighboring gene STARR-positive B cell enhancer mm9_chr5:11508325-11508626 Neighboring gene STARR-seq mESC enhancer starr_12434 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 1J Neighboring gene predicted gene, 21040 Neighboring gene STARR-positive B cell enhancer mm9_chr5:11595279-11595580 Neighboring gene anaphase-promoting complex subunit 5 pseudogene Neighboring gene predicted gene, 33847

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Clone Names

    • MGC129481

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC623898

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037919.3NP_001033008.1  uncharacterized protein LOC623898

      See identical proteins and their annotated locations for NP_001033008.1

      Status: PREDICTED

      Source sequence(s)
      AC175115
      Consensus CDS
      CCDS51413.1
      UniProtKB/TrEMBL
      E9PZ76, F6R3J9, Q2TB45
      Related
      ENSMUSP00000131216.3, ENSMUST00000163787.3
      Conserved Domains (1) summary
      pfam04822
      Location:891
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      11644923..11649447
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)