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    Gm5934 predicted gene 5934 [ Mus musculus (house mouse) ]

    Gene ID: 546272, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Gm5934provided by MGI
    Official Full Name
    predicted gene 5934provided by MGI
    Primary source
    MGI:MGI:3643862
    See related
    Ensembl:ENSMUSG00000084063 AllianceGenome:MGI:3643862
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG546272
    Summary
    Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm5934 in Genome Data Viewer
    Location:
    X A2; X 17.59 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (24340547..24365402, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (24474308..24499163, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene testin LIM domain protein like 2 Neighboring gene STARR-seq mESC enhancer starr_46930 Neighboring gene STARR-seq mESC enhancer starr_46931 Neighboring gene STARR-seq mESC enhancer starr_46932 Neighboring gene STARR-seq mESC enhancer starr_46933 Neighboring gene STARR-seq mESC enhancer starr_46934 Neighboring gene STARR-seq mESC enhancer starr_46935 Neighboring gene X-linked lymphocyte-regulated protein PM1-like Neighboring gene predicted gene 4297 Neighboring gene predicted gene, 41894

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in meiotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in spermatid development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in synaptonemal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC546272
    Names
    novel Xlr-related, meiosis regulated (Xmr) family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100444.2 → NP_001093914.1  uncharacterized protein LOC546272

      Status: PREDICTED

      Source sequence(s)
      AL671211
      Consensus CDS
      CCDS53020.1
      UniProtKB/TrEMBL
      D3Z4U6
      Related
      ENSMUSP00000113623.2, ENSMUST00000120734.2
      Conserved Domains (1) summary
      pfam04803
      Location:130 → 209
      Cor1; Cor1/Xlr/Xmr conserved region

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      24340547..24365402 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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