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    Gm42226 predicted gene, 42226 [ Mus musculus (house mouse) ]

    Gene ID: 105247050, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm42226provided by MGI
    Official Full Name
    predicted gene, 42226provided by MGI
    Primary source
    MGI:MGI:5625111
    See related
    AllianceGenome:MGI:5625111
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in genital fat pad adult (RPKM 29.3), spleen adult (RPKM 14.5) and 25 other tissues See more
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    Genomic context

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    See Gm42226 in Genome Data Viewer
    Location:
    5 A3; 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (23906769..23910656, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (23701771..23705658, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 5031425E22 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:22892703-22893070 Neighboring gene STARR-seq mESC enhancer starr_12606 Neighboring gene STARR-seq mESC enhancer starr_12607 Neighboring gene STARR-positive B cell enhancer ABC_E1297 Neighboring gene STARR-positive B cell enhancer ABC_E528 Neighboring gene lysine (K)-specific methyltransferase 2E Neighboring gene serine/arginine-rich protein specific kinase 2 Neighboring gene STARR-seq mESC enhancer starr_12611 Neighboring gene STARR-positive B cell enhancer mm9_chr5:23122338-23122639 Neighboring gene STARR-positive B cell enhancer mm9_chr5:23143262-23143562 Neighboring gene STARR-seq mESC enhancer starr_12614 Neighboring gene STARR-positive B cell enhancer mm9_chr5:23206519-23206819 Neighboring gene STARR-positive B cell enhancer ABC_E8818 Neighboring gene expressed sequence AI506816 Neighboring gene STARR-positive B cell enhancer ABC_E3564 Neighboring gene predicted gene, 50451 Neighboring gene pseudouridylate synthase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein Gm42226

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      23906769..23910656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011249800.2 → XP_011248102.1  uncharacterized protein Gm42226

      See identical proteins and their annotated locations for XP_011248102.1

      Conserved Domains (4) summary
      cd09273
      Location:232 → 372
      RNase_HI_RT_Bel; Bel/Pao family of RNase HI in long-term repeat retroelements
      pfam00665
      Location:498 → 572
      rve; Integrase core domain
      pfam17919
      Location:48 → 128
      RT_RNaseH_2; RNase H-like domain found in reverse transcriptase
      cl07828
      Location:391 → 485
      zf-H2C2; His(2)-Cys(2) zinc finger
    Nucleotide Protein Strain
    Heading Accession and Version

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