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    Gm39425 predicted gene, 39425 [ Mus musculus (house mouse) ]

    Gene ID: 105243532, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm39425provided by MGI
    Official Full Name
    predicted gene, 39425provided by MGI
    Primary source
    MGI:MGI:5622310
    See related
    Ensembl:ENSMUSG00000126194 AllianceGenome:MGI:5622310
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in heart adult (RPKM 1.6), testis adult (RPKM 0.8) and 8 other tissues See more
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    Genomic context

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    See Gm39425 in Genome Data Viewer
    Location:
    11 E1; 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (107080260..107096665)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (107189327..107210389)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene 11715 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:107050502-107050685 Neighboring gene nucleolar protein 11 Neighboring gene STARR-seq mESC enhancer starr_30965 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene actin, gamma, cytoplasmic 1 pseudogene Neighboring gene phosphatidylinositol transfer protein, cytoplasmic 1 Neighboring gene STARR-positive B cell enhancer ABC_E7084 Neighboring gene STARR-seq mESC enhancer starr_30969 Neighboring gene STARR-positive B cell enhancer mm9_chr11:107194258-107194558 Neighboring gene STARR-seq mESC enhancer starr_30972 Neighboring gene predicted gene 11716 Neighboring gene STARR-seq mESC enhancer starr_30979 Neighboring gene predicted gene 11713

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      107080260..107096665
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_880257.4 RNA Sequence

      Related
      ENSMUST00000274949.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials