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    Gm38505 predicted gene, 38505 [ Mus musculus (house mouse) ]

    Gene ID: 102638008, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm38505provided by MGI
    Official Full Name
    predicted gene, 38505provided by MGI
    Primary source
    MGI:MGI:5621390
    See related
    Ensembl:ENSMUSG00000092196 AllianceGenome:MGI:5621390
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm20446; Gm20514
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm38505 in Genome Data Viewer
    Location:
    3 A3; 3 16.74 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (34352322..34405847, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (34298173..34351698, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene SET translocation pseudogene Neighboring gene predicted gene, 52623 Neighboring gene VISTA enhancer mm1529 Neighboring gene predicted gene 20515 Neighboring gene predicted gene, 34599 Neighboring gene STARR-seq mESC enhancer starr_07369 Neighboring gene SOX2 overlapping transcript (non-protein coding) Neighboring gene microRNA 1897

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_166362.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122749
      Related
      ENSMUST00000271170.1

    2. NR_166363.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122749
      Related
      ENSMUST00000271169.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      34352322..34405847 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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