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    Cistr chondrogenesis associated transcript [ Mus musculus (house mouse) ]

    Gene ID: 102216269, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Cistrprovided by MGI
    Official Full Name
    chondrogenesis associated transcriptprovided by MGI
    Primary source
    MGI:MGI:5621321
    See related
    AllianceGenome:MGI:5621321
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm38436; Cistr-act
    Summary
    Orthologous to human CISTR (chondrogenesis-associated transcript). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human all
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    Genomic context

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    See Cistr in Genome Data Viewer
    Location:
    15 F3; 15
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (102654876..102655344, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (102746441..102746909, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene calcium binding and coiled coil domain 1 Neighboring gene STARR-positive B cell enhancer ABC_E2453 Neighboring gene STARR-positive B cell enhancer ABC_E7424 Neighboring gene predicted gene, 36510 Neighboring gene predicted gene, 36560 Neighboring gene STARR-seq mESC enhancer starr_39859 Neighboring gene homeobox C13 Neighboring gene homeobox C12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A misplaced lncRNA causes brachydactyly in humans. Maass PG, et al. J Clin Invest, 2012 Nov. PMID 23093776, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Other Names

    • chondrogenic regulator lncRNA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104334.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AW494227

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      102654876..102655344 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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