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    Gm28154 predicted gene 28154 [ Mus musculus (house mouse) ]

    Gene ID: 102634738, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm28154provided by MGI
    Official Full Name
    predicted gene 28154provided by MGI
    Primary source
    MGI:MGI:5578860
    See related
    Ensembl:ENSMUSG00000100053 AllianceGenome:MGI:5578860
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in limb E14.5 (RPKM 1.1), CNS E18 (RPKM 0.4) and 12 other tissues See more
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    Genomic context

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    See Gm28154 in Genome Data Viewer
    Location:
    1 A3; 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (17685307..17711606, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (17615083..17641382, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_00359 Neighboring gene peptidylprolyl isomerase A pseudogene 1_125.1 Neighboring gene STARR-seq mESC enhancer starr_00360 Neighboring gene STARR-seq mESC enhancer starr_00361 Neighboring gene STARR-seq mESC enhancer starr_00362 Neighboring gene STARR-seq mESC enhancer starr_00364 Neighboring gene predicted gene, 25166 Neighboring gene peptidase inhibitor 15 Neighboring gene STARR-seq mESC enhancer starr_00366 Neighboring gene predicted gene 16070 Neighboring gene cysteine-rich secretory protein LCCL domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_00368 Neighboring gene high mobility group box transcription factor 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      17685307..17711606 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004935552.1 RNA Sequence

    2. XR_373227.3 RNA Sequence

      Related
      ENSMUST00000186267.2

    3. XR_004935556.1 RNA Sequence

    4. XR_004935555.1 RNA Sequence

    5. XR_004935554.1 RNA Sequence

    6. XR_004935551.1 RNA Sequence

    7. XR_004935549.1 RNA Sequence

    8. XR_004935559.1 RNA Sequence

    9. XR_004935553.1 RNA Sequence

    10. XR_865211.2 RNA Sequence

    11. XR_004935550.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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