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    LOC6606350 synaptotagmin-like protein 5 [ Drosophila sechellia ]

    Gene ID: 6606350, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6606350
    Gene description
    synaptotagmin-like protein 5
    Locus tag
    Dsec_GM25824
    See related
    EnsemblRapid:LOC6606350
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila sechellia
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GM25824; GM25825; GM25824-PA; GM25825-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6606350 in Genome Data Viewer
    Location:
    chromosome: 3R
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current ASM438219v1 (GCF_004382195.1) 3R NC_045952.1 (13751108..13797718)

    Chromosome 3R - NC_045952.1Genomic Context describing neighboring genes Neighboring gene glycosaminoglycan xylosylkinase homolog Neighboring gene exosome component Rrp6 Neighboring gene trichohyalin Neighboring gene solute carrier family 22 member 6 Neighboring gene solute carrier family 22 member 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045952.1 Chromosome 3R Reference ASM438219v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables neurexin family protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in exocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein piccolo; synaptotagmin-like protein 4; synaptotagmin-like protein 5; uncharacterized protein LOC6606350
    Names
    Dsec\GM25824
    Dsec\GM25824-PA
    Dsec\GM25825
    Dsec\GM25825-PA
    dsec_GLEANR_8760
    dsec_GLEANR_8761

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM438219v1

    Genomic

    1. NC_045952.1 Reference ASM438219v1

      Range
      13751108..13797718
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032722776.1 → XP_032578667.1  uncharacterized protein LOC6606350 isoform X4

      Related
      XP_032578667.1, XM_032722776.1
      Conserved Domains (2) summary
      cd04020
      Location:3277 → 3466
      C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
      cd08521
      Location:3141 → 3263
      C2A_SLP; C2 domain first repeat present in Synaptotagmin-like proteins

    2. XM_032722775.1 → XP_032578666.1  uncharacterized protein LOC6606350 isoform X3

      Related
      XP_032578666.1, XM_032722775.1
      Conserved Domains (3) summary
      cd04020
      Location:3530 → 3719
      C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
      cd08521
      Location:3394 → 3516
      C2A_SLP; C2 domain first repeat present in Synaptotagmin-like proteins
      cd15747
      Location:27 → 74
      FYVE_Slp3_4_5; FYVE-related domain found in the synaptotagmin-like proteins 3, 4, 5

    3. XM_032722779.1 → XP_032578670.1  synaptotagmin-like protein 5 isoform X6

      Related
      XP_032578670.1, XM_032722779.1
      Conserved Domains (3) summary
      cd04020
      Location:1151 → 1340
      C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
      cd08521
      Location:1015 → 1137
      C2A_SLP; C2 domain first repeat present in Synaptotagmin-like proteins
      cd15747
      Location:27 → 74
      FYVE_Slp3_4_5; FYVE-related domain found in the synaptotagmin-like proteins 3, 4, 5

    4. XM_032722777.1 → XP_032578668.1  protein piccolo isoform X5

      Related
      XP_032578668.1, XM_032722777.1
      Conserved Domains (2) summary
      cd04020
      Location:933 → 1122
      C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
      cd08521
      Location:797 → 919
      C2A_SLP; C2 domain first repeat present in Synaptotagmin-like proteins

    5. XM_002031119.2 → XP_002031155.2  uncharacterized protein LOC6606350 isoform X1

      Related
      XP_002031155.2, XM_002031119.2
      Conserved Domains (2) summary
      cd04020
      Location:3243 → 3432
      C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
      cd08521
      Location:3107 → 3229
      C2A_SLP; C2 domain first repeat present in Synaptotagmin-like proteins

    6. XM_032722774.1 → XP_032578665.1  uncharacterized protein LOC6606350 isoform X2

      Related
      XP_032578665.1, XM_032722774.1
      Conserved Domains (2) summary
      cd04020
      Location:3242 → 3431
      C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
      cd08521
      Location:3106 → 3228
      C2A_SLP; C2 domain first repeat present in Synaptotagmin-like proteins

    7. XM_032722780.1 → XP_032578671.1  synaptotagmin-like protein 4 isoform X7

      Related
      XP_032578671.1, XM_032722780.1
      Conserved Domains (2) summary
      cd04020
      Location:508 → 697
      C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
      cd08521
      Location:372 → 494
      C2A_SLP; C2 domain first repeat present in Synaptotagmin-like proteins

    8. XM_032722781.1 → XP_032578672.1  synaptotagmin-like protein 4 isoform X8

      Related
      XP_032578672.1, XM_032722781.1
      Conserved Domains (2) summary
      cd04020
      Location:400 → 589
      C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
      cd08521
      Location:264 → 386
      C2A_SLP; C2 domain first repeat present in Synaptotagmin-like proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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