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    TrpA1 Transient receptor potential cation channel A1 [ Drosophila sechellia ]

    Gene ID: 6604949, updated on 16-May-2024

    Summary

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    Gene symbol
    TrpA1
    Gene description
    Transient receptor potential cation channel A1
    Locus tag
    Dsec_GM24909
    See related
    EnsemblRapid:LOC6604949
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila sechellia
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GM24909; GM24910; GM24909-PA; GM24910-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See TrpA1 in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    101 current ASM438219v1 (GCF_004382195.1) 3L NC_045951.1 (8697269..8706760, complement)

    Chromosome 3L - NC_045951.1Genomic Context describing neighboring genes Neighboring gene division abnormally delayed protein Neighboring gene uncharacterized LOC116800931 Neighboring gene minichromosome maintenance 7 Neighboring gene otoferlin Neighboring gene tetraspanin-18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045951.1 Chromosome 3L Reference ASM438219v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transient receptor potential cation channel subfamily A member 1
    Names
    Dsec\GM24909
    Dsec\GM24909-PA
    Dsec\GM24910
    Dsec\GM24910-PA
    dsec_GLEANR_7893
    dsec_GLEANR_7894

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM438219v1

    Genomic

    1. NC_045951.1 Reference ASM438219v1

      Range
      8697269..8706760 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032718614.1 → XP_032574505.1  transient receptor potential cation channel subfamily A member 1 isoform X2

      UniProtKB/TrEMBL
      B4HK42
      Related
      XP_032574505.1, XM_032718614.1
      Conserved Domains (5) summary
      PHA02874
      Location:334 → 632
      PHA02874; ankyrin repeat protein; Provisional
      sd00045
      Location:523 → 554
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:271 → 324
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:207 → 291
      Ank_2; Ankyrin repeats (3 copies)
      cl40437
      Location:526 → 1137
      TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

    2. XM_032718613.1 → XP_032574504.1  transient receptor potential cation channel subfamily A member 1 isoform X1

      UniProtKB/TrEMBL
      B4HK42
      Related
      XP_032574504.1, XM_032718613.1
      Conserved Domains (5) summary
      PHA02874
      Location:334 → 632
      PHA02874; ankyrin repeat protein; Provisional
      sd00045
      Location:523 → 554
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:271 → 324
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:207 → 291
      Ank_2; Ankyrin repeats (3 copies)
      cl40437
      Location:526 → 1138
      TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)
    Nucleotide Protein Strain
    Heading Accession and Version

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