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    LOC6618260 glutamate receptor ionotropic, kainate 2 [ Drosophila sechellia ]

    Gene ID: 6618260, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6618260
    Gene description
    glutamate receptor ionotropic, kainate 2
    Locus tag
    Dsec_GM23400
    See related
    EnsemblRapid:LOC6618260
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila sechellia
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GM23400; GM23400-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6618260 in Genome Data Viewer
    Location:
    chromosome: 2L
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current ASM438219v1 (GCF_004382195.1) 2L NC_045949.1 (20763488..20769466)

    Chromosome 2L - NC_045949.1Genomic Context describing neighboring genes Neighboring gene transforming growth factor beta-1-induced transcript 1 protein-like Neighboring gene transforming growth factor beta-1-induced transcript 1 protein Neighboring gene WD repeat domain phosphoinositide-interacting protein 2 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC116801012

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045949.1 Chromosome 2L Reference ASM438219v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutamate-gated receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in modulation of chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic transmission, glutamatergic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamate receptor ionotropic, kainate 2
    Names
    Dsec\GM23400
    Dsec\GM23400-PA
    dsec_GLEANR_6338

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM438219v1

    Genomic

    1. NC_045949.1 Reference ASM438219v1

      Range
      20763488..20769466
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032718139.1 → XP_032574030.1  glutamate receptor ionotropic, kainate 2 isoform X1

      Related
      XP_032574030.1, XM_032718139.1
      Conserved Domains (3) summary
      cd13714
      Location:414 → 787
      PBP2_iGluR_Kainate; Kainate receptor of the type 2 periplasmic-binding fold superfamily
      cd06382
      Location:27 → 397
      PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
      pfam00060
      Location:548 → 824
      Lig_chan; Ligand-gated ion channel

    2. XM_032718146.1 → XP_032574037.1  glutamate receptor ionotropic, kainate 2 isoform X3

      Related
      XP_032574037.1, XM_032718146.1
      Conserved Domains (3) summary
      cd13714
      Location:414 → 787
      PBP2_iGluR_Kainate; Kainate receptor of the type 2 periplasmic-binding fold superfamily
      cd06382
      Location:27 → 397
      PBP1_iGluR_Kainate; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
      pfam00060
      Location:548 → 824
      Lig_chan; Ligand-gated ion channel

    3. XM_002042498.2 → XP_002042534.1  glutamate receptor ionotropic, kainate 2 isoform X2

      See identical proteins and their annotated locations for XP_002042534.1

      UniProtKB/TrEMBL
      B4IFM4
      Related
      XP_002042534.1, XM_002042498.2
      Conserved Domains (4) summary
      cd06382
      Location:26 → 396
      PBP1_iGluR_Kainate; N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors
      cd13714
      Location:414 → 787
      PBP2_iGluR_Kainate; Kainate receptor of the type 2 periplasmic-binding fold superfamily
      pfam00060
      Location:548 → 824
      Lig_chan; Ligand-gated ion channel
      pfam01094
      Location:39 → 379
      ANF_receptor; Receptor family ligand binding region
    Nucleotide Protein Strain
    Heading Accession and Version

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