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    LOC6620460 protein lozenge [ Drosophila sechellia ]

    Gene ID: 6620460, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6620460
    Gene description
    protein lozenge
    Locus tag
    Dsec_GM22478
    See related
    EnsemblRapid:LOC6620460
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila sechellia
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GM22478; GM22478-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6620460 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current ASM438219v1 (GCF_004382195.1) X NC_045954.1 (9077737..9096048)

    Chromosome X - NC_045954.1Genomic Context describing neighboring genes Neighboring gene aladin Neighboring gene maestro heat-like repeat-containing protein family member 1 Neighboring gene spliceosome-associated protein CWC15 Neighboring gene von Willebrand factor A domain-containing protein c12.2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045954.1 Chromosome X Reference ASM438219v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein lozenge
    Names
    Dsec\GM22478
    Dsec\GM22478-PA
    dsec_GLEANR_525

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM438219v1

    Genomic

    1. NC_045954.1 Reference ASM438219v1

      Range
      9077737..9096048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002044631.2 → XP_002044667.1  protein lozenge isoform X1

      See identical proteins and their annotated locations for XP_002044667.1

      UniProtKB/TrEMBL
      B4ILQ7
      Related
      XP_002044667.1, XM_002044631.2
      Conserved Domains (1) summary
      pfam00853
      Location:280 → 401
      Runt; Runt domain

    2. XM_032725955.1 → XP_032581846.1  protein lozenge isoform X2

      Related
      XP_032581846.1, XM_032725955.1
      Conserved Domains (1) summary
      pfam00853
      Location:278 → 402
      Runt; Runt domain

    3. XM_032725956.1 → XP_032581847.1  protein lozenge isoform X3

      Related
      XP_032581847.1, XM_032725956.1
      Conserved Domains (1) summary
      pfam00853
      Location:30 → 67
      Runt; Runt domain
    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials